Sequencing of the Puccinia graminis CRL75-36-700-3 genome. - SRA

SRX005498: Sequencing of the Puccinia graminis CRL75-36-700-3 genome.
1 ILLUMINA (Illumina Genome Analyzer II) run: 21.4M spots, 2.8G bases, 2.3Gb downloads

UUID: a1d1e702-8756-43de-8bb2-d25a74d08961

Design: ~1Gb of Illumina sequencing.

Submitted by: Broad Institute (BI)

Study: WGS sequencing and assembly

PRJNA18535 • SRP000853 • All experiments • All runs

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The <a href="http://www.broad.mit.edu/annotation/genome/puccinia_graminis">Broad Institute</a> sequenced the Puccinia graminis f. sp. tritici strain CRL 75-36-700-3 genome at 7.88X coverage using whole genome shotgun (WGS) sequencing. The current assembly (Assembly 1) consists of 4,557 nuclear genome contigs in 392 supercontigs, and 6 mitochondrial genome contigs in 1 supercontig. The Puccinia graminis f. sp. tritici CRL 75-36-700-3 genome assembly will undergo automated annotation.

Sample: Generic sample from Puccinia graminis f. sp. tritici CRL 75-36-700-3

SAMN00013043 • SRS003266 • All experiments • All runs

Organism: Puccinia graminis f. sp. tritici CRL 75-36-700-3

Library:

Name: Solexa-9546

Instrument: Illumina Genome Analyzer II

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward77 reverse

Experiment attributes: (show all 5 attributes...) (hide...)

gssr_id: 30185.1

lsid: BROAD:SEQUENCING_SAMPLE:30185.1

material_type: Genomic DNA

project: G1859

work_request: 18188

Pipeline: show...hide...

Name	Step	Program	Version	Notes
2009-03-09 14:19:46.0	Rig Software	2.1.192	Image Analysis 1.3.2
base caller	2009-03-09 14:19:47.0	GAPipeline	1.3.2

Runs: 1 run, 21.4M spots, 2.8G bases, 2.3Gb

Run	# of Spots	# of Bases	Size	Published
SRR017448	21,428,344	2.8G	2.3Gb	2009-06-19

ID:: 5756

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